Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs61792271 chr3:153679499 C/T 0 504 21.83 22.78 0.23 KM Plot
LGG rs61792272 chr3:153679705 G/C 0 504 21.83 22.78 0.23 KM Plot
LGG rs61792303 chr3:153681098 G/T 0 506 22.47 22.73 0.23 KM Plot
LGG rs61830900 chr10:871481 C/G 3.92E-6 508 21.7 25.83 14.43 KM Plot
LGG rs61830926 chr10:910749 C/T 3.61E-7 507 21.7 25.83 14.15 KM Plot
LGG rs61830929 chr10:925966 A/G 5.39E-8 507 21.87 24.15 14.15 KM Plot
LGG rs61830931 chr10:932497 T/C 3.57E-7 504 21.83 25.18 14.5 KM Plot
LGG rs61830932 chr10:934183 T/C 7.35E-8 505 21.87 24.37 14.15 KM Plot
LGG rs61830933 chr10:934195 G/A 3.78E-7 502 21.77 24.53 14.5 KM Plot
LGG rs61830935 chr10:938623 G/A 2.52E-6 503 21.7 24.53 14.47 KM Plot
LGG rs61864977 chr10:86056336 T/C 4.74E-5 490 22.6 24.32 17.93 KM Plot
LGG rs61963709 chr13:78271388 C/T 5.83E-6 503 22.85 21.83 14.93 KM Plot
LGG rs61991632 chr14:77688017 C/T 4.06E-7 505 22.03 24.18 10.5 KM Plot
LGG rs62019675 chr16:8715287 C/A 2.88E-9 509 8.17 18.8 24.03 KM Plot
LGG rs62082986 chr17:67605760 C/T 4.68E-5 496 23.18 24.93 6.07 KM Plot